The Cocoa Swollen Shoot Disease (CSSD) due to badnavirus species is endemic in West Africa and caused significant and irreversible economy losses for smallholder cocoa farmers in infected areas in Ghana and Côte d’Ivoire. The impact of the disease on the small farmers livelihoods has been investigated at cocoa farm households level in Côte d‘Ivoire. For that, the propensity score matching method was used to construct a counterfactual and to compair group capturing the situation of affected households before the disease occuring on their plantation, based on the observable characteristics of non affected households. A total of 800 cocoa farmers were randomly interviewed using a semi-structured questionnaire. Results shown significant differences of expenditures for children’s schooling and health of household’s with plantations infected by the disease compared to non affected. It was also found that households with swollen shoot in their cocoa plantation use less modern health services and invest less in children’s education.
Tag: plant disease
First Report of Capsicum chlorosis virus Infecting Chromolaena odorata L. in Yunnan, China
Capsicum chlorosis virus (CaCV) is a negative sense ssRNA virus belonging to the genus Orthotospovirus in the family Tospoviridae. It was first discovered in Australia, and then reported in other places including Thailand, China, India, Greece, and United States (Zheng et al.2011; Melzer et al.2014; Chrysoula et al. 2018; Abudurexiti et al. 2019). CaCV infects plants of the families Amaranthaceae, Apocynaceae, Chenopodiaceae, Cucurbitaceae, Amaryllidaceae, Fabaceae and Solanaceae (Basavaraj et al. 2017; Basavaraj et al. 2020). Chromolaena odorata L. (commonly known as Feiji cao in China) is an invasive weedy herb that belongs to the genus Eupatorium (family Asteraceae), and is native to Central America. In May 2020, serrated chlorotic ring and chlorotic ringspots resembling symptoms of orthotospovirus infection (Supplementary Figure 1) was observed on the leaves of C. odorata plants in Honghe County, Yunnan. Three symptomatic leaf samples were collected and double antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) was performed using antisera targeting Tomato spotted wilt virus (TSWV), Calla lily chlorotic spot virus (CCSV), Capsicum chlorosis virus (CaCV), and Tomato zonate spot virus (TZSV) (Proteintech Group, Inc., China). Buffer solution and healthy leaves were used as a blank and negative controls, respectively. All three symptomatic samples showed positive reactions with only CaCV antiserum (OD450 of 0.315-0.345 relative to 0.078 and 0.076 for healthy plants and the blank control, respectively. The total RNA extracted from the positive samples were further analyzed by reverse transcription-polymerase chain reaction (RT-PCR) using generic primers gL3637 (CCTTTAACAGTDGAAACAT) and gL4435c (CATDGCRCAAGARTGRTARACAGA) which were designed to amplify partial L segment encoding the RNA-dependent RNA polymerase (RdRP) of orthotospoviruses (Chu, et al. 2001). The expected ~800 bp DNA fragment was amplified from all three positive samples by RT-PCR. The amplified DNA was cloned and sequenced. BLAST search of the partial L RNA sequence (GenBank acc. nos. MW964378 to MW964380) revealed that they shared 86.2-97.4% nucleotide (nt) and 97.2-100% amino acid (aa) sequence identities with different isolates of CaCV available in GenBank with CaCV chili isolates (KU941834 to KU941836) from India sharing the highest aa identity of 100%. This confirmed the presence of CaCV in the symptomatic C. odorata plants. The 825 bp complete nucleocapsid protein (NP) of CaCV was also amplified from the samples using primers CaCV-F: ATGTCTAMCGTYAGGCAAC and CaCV-R: TYACACYTCWATAGAWGTACTAG) (Basavaraj et al. 2020), cloned, and sequenced to obtain complete S fragment-nucleocapsid protein (NP) with a size of 825 bp (MW964381 to MW964383). The pairwise comparisons of three fragments showed 85.1-98.3% nt and 87.6-99.6% aa sequence identities with different isolates of CaCV. Maximum-Likelihood phylogenetic trees inferred from the partial RdRP and complete NP aa sequences showed that the C. odorata isolates (CaCV-YN) clustered closely with CaCV tomato isolate from Taiwan and tomato (Yuxi-2013) isolate from China, respectively (Supplementary Figure 1). To our knowledge, this is the first time CaCV has been detected in C. odorata. This study will serve as an important reference for the study of host range of CaCV. Further studies will be required to determine whether thrips could transmit CaCV between C. odorata and other hosts of the virus.
Population dynamics of Hippophae rhamnoides shrub in response of sea-level rise and insect outbreaks
The coastal vegetation of islands is expected to be affected by future sea-level rise and other anthropogenic impacts. The biodiverse coastal vegetation on the eastern part of the Dutch Wadden Island of Ameland has experienced land subsidence caused by gas extraction since 1986. This subsidence mimics future sea-level rising through increased flooding and raising groundwater levels. We studied the effects of this relative sea-level rise and other environmental factors (i.e. insect outbreaks, temperature and precipitation) on the population dynamics (i.e. cover and age structure and annual growth) of the shrub seabuckthorn (Hippophae rhamnoides L.) in young (formed after 1950) and old (formed before 1950) dune areas over a period of 56 years (1959–2015). We found an increase in seabuckthorn cover in the young dune areas since 1959, while over time the population in the old dunes decreased due to successional replacement by other species. With the increasing age of the young dunes, we found also a decrease in sea-buckthorn after 2009. However the sharp decrease indicated that other environmental factors were also involved. The most important determinant of annual shrub growth appeared to be five outbreaks of the brown-tail moth (Euproctis chrysorrhoea L.), in the last decade. Relative sea-level rise caused more frequent flooding and reduced growth at lower elevations due to inundation or soil water saturation. This study clearly indicates that sea-buckthorn is affected by relative sea-level rise, but that other ecological events better explain its variation in growth. Although shrub distribution and growth can be monitored with robust methods, future predictions of vegetation dynamics are complicated by unpredictable extreme events caused by (a)biotic stressors such as insect outbreaks.