During our studies on fungal diversity from plant substrates, a new species of Valsaria was isolated from dead branches of Ostrya carpinifolia. The taxon is morphologically similar to other taxa in Valsariaceae and is characterized by pseudostromata, apically free pseudoparaphyses, bitunicate asci, and dark brown, 2-celled ascospores. However, it differs from extant species in number of guttules and ornamentation of spore. It is introduced herein as Valsaria ostryae sp. nov. within the family Valsariaceae. Multigene phylogenies based on combined LSU, ITS and RPB2 DNA sequence data generated from maximum likelihood, maximum parsimony and MrBayes analyses indicate that V. ostryae is basal to V. lopadostomoides and V. rudis and its establishment as a new species is strongly supported. No discordance was found between our morphological and phylogenetic species boundaries as postulated by other researchers and our molecular data strongly supports ornamentation of spore as useful for species delineation. Valsaria species do not appear to be host specific. Full morphological details are provided herein and phylogenetic relationships of Valsaria species are also discussed in light with host association.
Tag: photosynthesis
The influence of R:FR ratio on the growth, photosynthesis and rooting ability of Terminalia spinosa Engl. and Triplochiton scleroxylon K. Schum
Stockplants of the tropical hardwoods Terminalia spinosa Engl, and Triplochiton scleroxylon K. Schum were grown in a controlled environment under red:far-red (R:FR) ratios ranging from 0.5-3.1. In both species, rates of shoot height increment were higher (P < 0.05) under the low R:FR ratios as a result of increased internode elongation. In Terminalia spinosa, specific leaf area (SLA) was also significantly higher under lower R:FR ratios, values ranging from 175 to 210 cm2 g-1 in the 3.1 and 0.9 treatments respectively. No effect of R:FR ratio on SLA was recorded in Triplochiton scleroxylon. Pre-severance photo-synthetic rate, stomatal conductance and water-use efficiency were increased under the higher R:FR ratios in Terminalia spinosa, rates of photosynthesis ranging between 2.68-4.59 mol m-2 s-1 in the 0.5 and 3.1 R:FR treatments respectively. Gas exchange rates of Triplochiton scleroxylon were unaffected by R:FR treatment. These contrasting responses to variation in R:FR ratio were associated with differences in rooting ability. In Terminalia spinosa, significantly higher percentage rooting was recorded in the cuttings from the 3.1 R:FR treatment than from 0.5, with values of 93.7% and 77.5% recorded respectively. R:FR ratio also affected rooting percentages of Triplochiton scleroxylon, but in this case, higher rooting percentages were recorded in the lower R:FR ratios, values ranging from 31.1–54.1% in the 3.0 and 0.5 R.FR treatments respectively. This difference in rooting response is attributed to the contrasting effects of R:FR ratio on the leaf and stem morphology of the two species. The implications of these results for stockplant management are discussed.
Spatiotemporal variability in carbon exchange fluxes across the Sahel
Semi-arid regions play an increasingly important role as a sink within the global carbon (C) cycle and is the main biome driving inter-annual variability in carbon dioxide (CO2) uptake by terrestrial ecosystems. This indicates the need for detailed studies of spatiotemporal variability in C cycling for semi-arid ecosystems. We have synthesized data on the land-atmosphere exchange of CO2 measured with the eddy covariance technique from the six existing sites across the Sahel, one of the largest semi-arid regions in the world. The overall aim of the study is to analyse and quantify the spatiotemporal variability in these fluxes and to analyse to which degree spatiotemporal variation can be explained by hydrological, climatic, edaphic and vegetation variables. All ecosystems were C sinks (average ± total error -162 ± 48 g C m-2 y-1), but were smaller when strongly impacted by anthropogenic influences. Spatial and inter-annual variability in the C flux processes indicated a strong resilience to dry conditions, and were correlated with phenological metrics. Gross primary productivity (GPP) was the most important flux process affecting the sink strength, and diurnal variability in GPP was regulated by incoming radiation, whereas seasonal dynamics was closely coupled with phenology, and soil water content. Diurnal variability in ecosystem respiration was regulated by GPP, whereas seasonal variability was strongly coupled to phenology and GPP. A budget for the entire Sahel indicated a strong C sink mitigating the global anthropogenic C emissions. Global circulation models project an increase in temperature, whereas rainfall is projected to decrease for western Sahel and increase for the eastern part, indicating that the C sink will possibly decrease and increase for the western and eastern Sahel, respectively. © 2016 Elsevier B.V.
Hyperspectral Reflectance for Measuring Canopy-Level Nutrients and Photosynthesis in a Salt Marsh
Salt marsh ecosystems are underrepresented in process-based models due to their unique location across the terrestrial–aquatic interface. Particularly, the role of leaf nutrients on canopy photosynthesis (FA) remains unclear, despite their relevance for regulating vegetation growth. We combined multiyear information of canopy-level nutrients and eddy covariance measurements with canopy surface hyperspectral remote sensing (CSHRS) to quantify the spatial and temporal variability of FA in a temperate salt marsh. We found that FA showed a positive relationship with canopy-level N at the ecosystem scale and for areas dominated by Spartina cynosuroides, but not for areas dominated by short S. alterniflora. FA showed a positive relationship with canopy-level P, K, and Na, but a negative relationship with Fe, for areas associated with S. cynosuroides, S. alterniflora, and at the ecosystem scale. We used partial least squares regression (PLSR) with CSHRS and found statistically significant data–model agreements to predict canopy-level nutrients and FA. The red-edge electromagnetic region and ∼770 nm showed the highest contribution of variance in PLSR models for canopy-level nutrients and FA, but we propose that underlying sediment biogeochemistry can complicate interpretation of reflectance measurements. Our findings highlight the relevance of spatial variability in salt marshes vegetation and the promising application of CSHRS for linking information of canopy-level nutrients with FA. We call for further development of canopy surface hyperspectral methods and analyses across salt marshes to improve our understanding of how these ecosystems will respond to global environmental change.
The Gynandropsis gynandra genome provides insights into whole-genome duplications and the evolution of C4 photosynthesis in Cleomaceae
Gynandropsis gynandra (Cleomaceae) is a cosmopolitan leafy vegetable and medicinal plant, which has also been used as a model to study C4 photosynthesis due to its evolutionary proximity to C3 Arabidopsis (Arabidopsis thaliana). Here, we present the genome sequence of G. gynandra, anchored onto 17 main pseudomolecules with a total length of 740 Mb, an N50 of 42 Mb and 30,933 well-supported gene models. The G. gynandra genome and previously released genomes of C3 relatives in the Cleomaceae and Brassicaceae make an excellent model for studying the role of genome evolution in the transition from C3 to C4 photosynthesis. Our analyses revealed that G. gynandra and its C3 relative Tarenaya hassleriana shared a whole-genome duplication event (Gg-α), then an addition of a third genome (Th-α, +1×) took place in T. hassleriana but not in G. gynandra. Analysis of syntenic copy number of C4 photosynthesis-related gene families indicates that G. gynandra generally retained more duplicated copies of these genes than C3T. hassleriana, and also that the G. gynandra C4 genes might have been under positive selection pressure. Both whole-genome and single-gene duplication were found to contribute to the expansion of the aforementioned gene families in G. gynandra. Collectively, this study enhances our understanding of the polyploidy history, gene duplication and retention, as well as their impact on the evolution of C4 photosynthesis in Cleomaceae.
Limited thermal acclimation of photosynthesis in tropical montane tree species
The temperature sensitivity of physiological processes and growth of tropical trees remains a key uncertainty in predicting how tropical forests will adjust to future climates. In particular, our knowledge regarding warming responses of photosynthesis, and its underlying biochemical mechanisms, is very limited. We grew seedlings of two tropical montane rainforest tree species, the early-successional species Harungana montana and the late-successional species Syzygium guineense, at three different sites along an elevation gradient, differing by 6.8℃ in daytime ambient air temperature. Their physiological and growth performance was investigated at each site. The optimum temperature of net photosynthesis (ToptA) did not significantly increase in warm-grown trees in either species. Similarly, the thermal optima (ToptV and ToptJ) and activation energies (EaV and EaJ) of maximum Rubisco carboxylation capacity (Vcmax) and maximum electron transport rate (Jmax) were largely unaffected by warming. However, Vcmax, Jmax and foliar dark respiration (Rd) at 25℃ were significantly reduced by warming in both species, and this decline was partly associated with concomitant reduction in total leaf nitrogen content. The ratio of Jmax/Vcmax decreased with increasing leaf temperature for both species, but the ratio at 25℃ was constant across sites. Furthermore, in H. montana, stomatal conductance at 25℃ remained constant across the different temperature treatments, while in S. guineense it increased with warming. Total dry biomass increased with warming in H. montana but remained constant in S. guineense. The biomass allocated to roots, stem and leaves was not affected by warming in H. montana, whereas the biomass allocated to roots significantly increased in S. guineense. Overall, our findings show that in these two tropical montane rainforest tree species, the capacity to acclimate the thermal optimum of photosynthesis is limited while warming-induced reductions in respiration and photosynthetic capacity rates are tightly coupled and linked to responses of leaf nitrogen.
Biofilm forming rhizobacteria enhance growth and salt tolerance in sunflower plants by stimulating antioxidant enzymes activity
Salinity stress is one of the major environmental stresses that impose global socio-economic impacts, as well as hindering crop productivity. Halotolerant plant growth-promoting rhizobacteria (PGPR) having potential to cope with salinity stress can be employed to counter this issue in eco-friendly way. In the present investigation, halotolerant PGPR strains, AP6 and PB5, were isolated from saline soil and characterized for their biochemical, molecular and physiological traits. Sequencing of 16 S rRNA gene and comparative analysis confirmed the taxonomic affiliation of AP6 with Bacillus licheniformis and PB5 with Pseudomonas plecoglossicida. The study was carried out in pots with different levels of induced soil salinity viz. 0, 5, 10 and 15 dSm−1 to evaluate the potential of bacterial inoculants in counteracting salinity stress in sunflower at different plant growth stages (30, 45 and 60 days after sowing). Both the bacterial inoculants were capable of producing indole acetic acid and biofilm, solubilizing inorganic rock phosphate, and also expressed ACC deaminase activity. The PGPR inoculated plants showed significantly higher fresh and dry biomass, plant height, root length and yield plant−1. Ameliorative significance of applied bacterial inoculants was also evidenced by mitigating oxidative stress through upregulation of catalase (CAT), superoxide dismutase (SOD) and guaiacol peroxidase (GPX) antioxidant enzymes. Increase in photosynthetic pigments, gas exchange activities and nutrient uptake are crucial salt stress adaptations, which were enhanced with the inoculation of salt tolerant biofilm producing PGPR in sunflower plants. Although increase in salinity stress levels has gradually decreased the plant’s output compared to non-salinized plants, the plants inoculated with PGPR confronted salinity stress in much better way than uninoculated plants. Owing to the wide action spectrum of these bacterial inoculants, it was concluded that these biofilm PGPR could serve as effective bioinoculants and salinity stress alleviator for sunflower (oil seed crop) by increasing crop productivity in marginalized agricultural systems. © 2020 Elsevier Masson SAS
Traits controlling shade tolerance in tropical montane trees
Tropical canopies are complex, with multiple canopy layers and pronounced gap dynamics contributing to their high species diversity and productivity. An important reason for this complexity is the large variation in shade tolerance among different tree species. At present, we lack a clear understanding of which plant traits control this variation, e.g., regarding the relative contributions of whole-plant versus leaf traits or structural versus physiological traits. We investigated a broad range of traits in six tropical montane rainforest tree species with different degrees of shade tolerance, grown under three different radiation regimes (under the open sky or beneath sparse or dense canopies). The two distinct shade-tolerant species had higher fractional biomass in leaves and branches while shade-intolerant species invested more into stems, and these differences were greater under low radiation. Leaf respiration and photosynthetic light compensation point did not vary with species shade tolerance, regardless of radiation regime. Leaf temperatures in open plots were markedly higher in shade-tolerant species due to their low transpiration rates and large leaf sizes. Our results suggest that interspecific variation in shade tolerance of tropical montane trees is controlled by species differences in whole-plant biomass allocation strategy rather than by difference in physiological leaf traits determining leaf carbon balance at low radiation. © 2019 The Author(s) 2019. Published by Oxford University Press.